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Circadian Rhythms
Methods and Protocols (Methods in Molecular Biology)
By Ezio Rosato (Edited by)

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Format
Paperback, 578 pages
Other Formats Available

Hardback : £164.00

Published
United States, 28 October 2010

This is an in-depth examination of circadian biology, presented by leading researchers in the field. Methods for analysis of rhythmic readouts in select model organisms are included. This cutting-edge collection of protocols is adaptable for research at every level, and represents the huge strides that chronobiologists have made over the past two decades. Circadian biologists at all research levels will realize tremendous benefit from this extraordinary collection.


Preface Contributors I. Overviews. 1. Light, photoreceptors and circadian clocks Russell G. Foster, Mark W. Hankins and Stuart N. Peirson 2. Statistical analysis of biological rhythm data Harold B. Dowse II. Rhythmic Readouts. 3. Rhythmic conidiation in Neurospora crassa. Cas Kramer 4. Monitoring and analyzing Drosophila circadian locomotor activity. Mauro A. Zordan, Clara Benna and Gabriella Mazzotta. 5. Automated video image analysis of larval zebrafish locomotor rhythms. Gregory M. Cahill 6. Locomotor activity in rodents. Gianluca Tosini 7. Analysis of circadian leaf movement rhythms in Arabidopsis thaliana. Kieron D. Edwards and Andrew J. Millar 8. Detection of rhythmic bioluminescence from luciferase reporters in cyanobacteria. Shannon R. Canales, Jayna L. Ditty, Eugenia M. Clerico and Susan S. Golden 9. Analysis of rhythmic gene expression in adult Drosophila using the firefly-luciferase reporter gene. Ralf Stanewsky 10. Monitoring circadian rhythms in Arabidopsis thaliana using luciferase reporter genes. Anthony Hall and Paul Brown III. Identification of Clock Genes. 11. Specialized techniques for site directed mutagenesis in cyanobacteria Eugenia M. Clerico, Jayna L. Ditty and Susan S. Golden 12. Novel strategies for the identification of clock genes in Neurospora with insertional mutagenesis Kruno Sveric, Moyra Mason, Till Roenneberg and Martha Merrow 13. Mutagenesis with Drosophila Patrick Emery 14. Mutagenesis in Arabidopsis. Jodi Maple and Simon G. Møller 15. Yeast-two-hybrid screening. Jodi Maple and Simon G. Møller 16. Microarrays: quality control and hybridization protocol. Ken-ichiro Uno and Hiroki R. Ueda 17. Microarrays: statistical methods for circadian rhythms. Rikuhiro Yamada and Hiroki R. Ueda 18. Identification of clock genes using difference gel electrophoresis (DIGE). Natasha A. Karp and Kathryn S. Lilley IV. Gene Expression: RNA. 19. Isolation of total RNA from Neurospora mycelium. Cas Kramer 20. RNA extraction from Drosophila heads. Patrick Emery 21. Extraction of plant RNA. Michael G. Salter and Helen E. Conlon 22. RNA Extraction from mammalian tissues. Stuart N. Peirson and Jason N. Butler 23. Northern analysis of sense and antisense frequency RNA in Neurospora crassa. Cas Kramer 24. RNase protection assay. Patrick Emery 25. Quantitative PCR. Stuart N. Peirson and Jason N. Butler V. Gene Expression: Proteins. 26. Protein extraction, fractionation and purification from cyanobacteria. Natalia B. Ivleva and Susan S. Golden 27. Protein extraction from Drosophila heads. Patrick Emery 28. Plant protein extraction. Helen E. Conlon and Michael G. Salter 29. Protein extraction from mammalian tissues. Choogon Lee 30. Western blotting. Choogon Lee 31. Co-immunoprecipitation (coIP) assay. Choogon Lee 32. In vitro phosphorylation and kinase assays in Neurospora crassa. Lisa Franchi, Giuseppe Macino VI. In vitro Systems. 33. Basic protocols for Drosophila S2 cell line: maintenance and transfection M. Fernanda Ceriani 34. Co-immunoprecipitation on Drosophila cells in culture M. Fernanda Ceriani 35. Basic protocols for zebrafish cell lines: maintenance and transfection. Daniela Vallone, Cristina Santoriello, Srinivas Babu Gondi and Nicholas S. Foulkes 36. Manipulation of mammalian cell lines for circadian studies. Filippo Tamanini 37. Reporter assays. M. Fernanda Ceriani 38. Use of firefly luciferase activity assays to monitor circadian molecular rhythms in vivo and in vitro. Wangjie Yu and Paul E. Hardin 39. SCN cultures that maintain rhythmic properties in vitro. K. Tominaga-Yoshino, T. Ueyama and H. Okamura VII. Microscopy analysis. 40. RNA in situ hybridisations on Drosophila whole mounts. Corinna Wülbeck and Charlotte Helfrich-Förster 41. In situ hybridisation of SCN slices. Horacio O. de la Iglesia 42. Immunohistochemistry in Drosophila, sections and whole mounts. Charlotte Helfrich-Förster 43. Immunocytochemistry on SCN slices Marta Muñoz Llamosas 44. Immunofluorescence analysis of circadian protein dynamics in cultured mammalian cells. Filippo Tamanini

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Product Description

This is an in-depth examination of circadian biology, presented by leading researchers in the field. Methods for analysis of rhythmic readouts in select model organisms are included. This cutting-edge collection of protocols is adaptable for research at every level, and represents the huge strides that chronobiologists have made over the past two decades. Circadian biologists at all research levels will realize tremendous benefit from this extraordinary collection.


Preface Contributors I. Overviews. 1. Light, photoreceptors and circadian clocks Russell G. Foster, Mark W. Hankins and Stuart N. Peirson 2. Statistical analysis of biological rhythm data Harold B. Dowse II. Rhythmic Readouts. 3. Rhythmic conidiation in Neurospora crassa. Cas Kramer 4. Monitoring and analyzing Drosophila circadian locomotor activity. Mauro A. Zordan, Clara Benna and Gabriella Mazzotta. 5. Automated video image analysis of larval zebrafish locomotor rhythms. Gregory M. Cahill 6. Locomotor activity in rodents. Gianluca Tosini 7. Analysis of circadian leaf movement rhythms in Arabidopsis thaliana. Kieron D. Edwards and Andrew J. Millar 8. Detection of rhythmic bioluminescence from luciferase reporters in cyanobacteria. Shannon R. Canales, Jayna L. Ditty, Eugenia M. Clerico and Susan S. Golden 9. Analysis of rhythmic gene expression in adult Drosophila using the firefly-luciferase reporter gene. Ralf Stanewsky 10. Monitoring circadian rhythms in Arabidopsis thaliana using luciferase reporter genes. Anthony Hall and Paul Brown III. Identification of Clock Genes. 11. Specialized techniques for site directed mutagenesis in cyanobacteria Eugenia M. Clerico, Jayna L. Ditty and Susan S. Golden 12. Novel strategies for the identification of clock genes in Neurospora with insertional mutagenesis Kruno Sveric, Moyra Mason, Till Roenneberg and Martha Merrow 13. Mutagenesis with Drosophila Patrick Emery 14. Mutagenesis in Arabidopsis. Jodi Maple and Simon G. Møller 15. Yeast-two-hybrid screening. Jodi Maple and Simon G. Møller 16. Microarrays: quality control and hybridization protocol. Ken-ichiro Uno and Hiroki R. Ueda 17. Microarrays: statistical methods for circadian rhythms. Rikuhiro Yamada and Hiroki R. Ueda 18. Identification of clock genes using difference gel electrophoresis (DIGE). Natasha A. Karp and Kathryn S. Lilley IV. Gene Expression: RNA. 19. Isolation of total RNA from Neurospora mycelium. Cas Kramer 20. RNA extraction from Drosophila heads. Patrick Emery 21. Extraction of plant RNA. Michael G. Salter and Helen E. Conlon 22. RNA Extraction from mammalian tissues. Stuart N. Peirson and Jason N. Butler 23. Northern analysis of sense and antisense frequency RNA in Neurospora crassa. Cas Kramer 24. RNase protection assay. Patrick Emery 25. Quantitative PCR. Stuart N. Peirson and Jason N. Butler V. Gene Expression: Proteins. 26. Protein extraction, fractionation and purification from cyanobacteria. Natalia B. Ivleva and Susan S. Golden 27. Protein extraction from Drosophila heads. Patrick Emery 28. Plant protein extraction. Helen E. Conlon and Michael G. Salter 29. Protein extraction from mammalian tissues. Choogon Lee 30. Western blotting. Choogon Lee 31. Co-immunoprecipitation (coIP) assay. Choogon Lee 32. In vitro phosphorylation and kinase assays in Neurospora crassa. Lisa Franchi, Giuseppe Macino VI. In vitro Systems. 33. Basic protocols for Drosophila S2 cell line: maintenance and transfection M. Fernanda Ceriani 34. Co-immunoprecipitation on Drosophila cells in culture M. Fernanda Ceriani 35. Basic protocols for zebrafish cell lines: maintenance and transfection. Daniela Vallone, Cristina Santoriello, Srinivas Babu Gondi and Nicholas S. Foulkes 36. Manipulation of mammalian cell lines for circadian studies. Filippo Tamanini 37. Reporter assays. M. Fernanda Ceriani 38. Use of firefly luciferase activity assays to monitor circadian molecular rhythms in vivo and in vitro. Wangjie Yu and Paul E. Hardin 39. SCN cultures that maintain rhythmic properties in vitro. K. Tominaga-Yoshino, T. Ueyama and H. Okamura VII. Microscopy analysis. 40. RNA in situ hybridisations on Drosophila whole mounts. Corinna Wülbeck and Charlotte Helfrich-Förster 41. In situ hybridisation of SCN slices. Horacio O. de la Iglesia 42. Immunohistochemistry in Drosophila, sections and whole mounts. Charlotte Helfrich-Förster 43. Immunocytochemistry on SCN slices Marta Muñoz Llamosas 44. Immunofluorescence analysis of circadian protein dynamics in cultured mammalian cells. Filippo Tamanini

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Product Details
EAN
9781617375538
ISBN
1617375535
Other Information
78 Tables, black and white; 115 Illustrations, black and white; XIV, 578 p. 115 illus.
Dimensions
22.9 x 15.2 x 3.4 centimeters (0.86 kg)

Table of Contents

Overviews.- Light, Photoreceptors, and Circadian Clocks.- Statistical Analysis of Biological Rhythm Data.- Rhythmic Readouts.- Rhythmic Conidiation in Neurospora crassa.- Monitoring and Analyzing Drosophila Circadian Locomotor Activity.- Automated Video Image Analysis of Larval Zebrafish Locomotor Rhythms.- Locomotor Activity in Rodents.- Analysis of Circadian Leaf Movement Rhythms in Arabidopsis thaliana.- Detection of Rhythmic Bioluminescence From Luciferase Reporters in Cyanobacteria.- Analysis of Rhythmic Gene Expression in Adult Drosophila Using the Firefly Luciferase Reporter Gene.- Monitoring Circadian Rhythms in Arabidopsis thaliana Using Luciferase Reporter Genes.- Identification of Clock Genes.- Specialized Techniques for Site-Directed Mutagenesis in Cyanobacteria.- Novel Strategies for the Identification of Clock Genes Neurospora With Insertional Mutagenesis.- Mutagenesis With Drosophila.- Mutagenesis in Arabidopsis.- Yeast Two-Hybrid Screening.- Microarrays.- Microarrays.- Identification of Clock Genes Using Difference Gel Electrophoresis.- Gene Expression: RNA.- Isolation of Total RNA From Neurospora Mycelium.- RNA Extraction From Drosophila Heads.- Extraction of Plant RNA.- RNA Extraction From Mammalian Tissues.- Northern Analysis of Sense and Antisense frequency RNA in Neurospora crassa.- RNase Protection Assay.- Quantitative Polymerase Chain Reaction.- Gene Expression: Proteins.- Protein Extraction, Fractionation, and Purification From Cyanobacteria.- Protein Extraction From Drosophila Heads.- Plant Protein Extraction.- Protein Extraction From Mammalian Tissues.- Western Blotting.- Coimmunoprecipitation Assay.- In Vitro Phosphorylation and Kinase Assays in Neurospora crassa.- In Vitro Systems.- Basic Protocols for Drosophila S2 Cell Line.- Coimmunoprecipitation on Drosophila Cells in Culture.- Basic Protocols for Zebrafish Cell Lines.- Manipulation of Mammalian Cell Lines for Circadian Studies.- Reporter Assays.- Use of Firefly Luciferase Activity Assays to Monitor Circadian Molecular Rhythms In Vivo and In Vitro.- Suprachiasmatic Nucleus Cultures That Maintain Rhythmic Properties In Vitro.- Microscopy Analysis.- RNA In Situ Hybridizations on Drosophila Whole Mounts.- In Situ Hybridization of Suprachiasmatic Nucleus Slices.- Immunohistochemistry in Drosophila.- Immunocytochemistry on Suprachiasmatic Nucleus Slices.- Immunofluorescence Analysis of Circadian Protein Dynamics in Cultured Mammalian Cells.

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